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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16893322_16897186_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16893322 - 16897186
Intron Length:
3865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAC
Flanking Amino Acid:
LNAFGNAFLNRFVCAQLPNP
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.9
0.67
0.9
76.1
37.6
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
67.7
0.53
1.4
75.88
33.9

Associated Gene:

Gene:
EHD3
Ensembl Gene ID:
ENSAPLG00000010467
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010929
16887581 - 16914580
27000