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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16897285_16910288_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16897285 - 16910288
Intron Length:
13004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCACCCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAC
U12 Branch Point Sequence:
TCTTCCTCCACC
Flanking Amino Acid:
LSGEKQRISRGYDFAAVLEW
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.8
78.8
35.5
Major BPS
47
-0.1
1.3
55.7
39.5
Major PPT
68.3
0.41
0.8
61.7
28.6
Minor 5ss
35.5
-1.6
2.8
45.4
42.6
Minor BPS
61.1
0.33
2
74.56
42.5

Associated Gene:

Gene:
EHD3
Ensembl Gene ID:
ENSAPLG00000010467
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010929
16887581 - 16914580
27000