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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_169085_171077_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
169085 - 171077
Intron Length:
1993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGCTTCAAAT
Flanking Amino Acid:
QMAISGGFIRRVTNDARENE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
87.3
0.84
0.8
80.5
37
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
61.3
0.43
1.8
81.38
40.3

Associated Gene:

Gene:
SNAP25
Ensembl Gene ID:
ENSAPLG00000008826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009204
148081 - 174889
26809