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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16910702_16911787_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16910702 - 16911787
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TAATGCCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATCCTGTAATG
Flanking Amino Acid:
DLIKRARLAKVHAYIISSLK
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
100
1.24
0.5
100
0
Major PPT
72
0.49
0.9
67.2
39.8
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
51.3
-0.1
2.1
61.67
40.7

Associated Gene:

Gene:
EHD3
Ensembl Gene ID:
ENSAPLG00000010467
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010929
16887581 - 16914580
27000