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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16937013_16937182_R

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16937013 - 16937182
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
GTTTATTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTTACCAGAAAC
Flanking Amino Acid:
PNSKAVYSSKRTRSNLHVAS
Intron Amino Acid Position:
1288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.1
0.63
1
72.4
42.2
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
48
-0.1
1.9
62.84
41.7

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027351
16936563 - 16980790
44228