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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16939962_16940382_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16939962 - 16940382
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTGTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
GTGGAATGAAAT
Flanking Amino Acid:
CVSLSATGFYRIPDLGYDFE
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
68.4
0.42
1.2
67.2
43
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
41.9
-0.5
1.9
57.59
44.1

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826