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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16941434_16942469_R

Intron Information:

Intron Rank:
31
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16941434 - 16942469
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACTGAAA
5'SS Class:
weak_major
3'SS Sequence:
TATTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCGTTATTT
Flanking Amino Acid:
SADINGMAVHNACQTILKRL
Intron Amino Acid Position:
1110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.6
0.23
1.2
60.9
39.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.1
0.74
0.8
81.5
35.9
Minor 5ss
33
-1.9
3.4
43.3
44.4
Minor BPS
62.3
0.47
2.3
87.57
38.6

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826