About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16942599_16943052_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16942599 - 16943052
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
AGCCTCTTACCA
Flanking Amino Acid:
GQGLHTKMIQVASRSLGIPT
Intron Amino Acid Position:
1067

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77.4
37.4
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
86
0.81
0.8
80.7
31.4
Minor 5ss
37.2
-1.5
3
49.1
46.7
Minor BPS
52.1
0.06
1.6
59.42
40.3

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826