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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16943149_16943777_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16943149 - 16943777
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGTAAG
5'SS Class:
major
3'SS Sequence:
TTCCCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAC
U12 Branch Point Sequence:
TTCCCTTTTATA
Flanking Amino Acid:
ISFTVPFLNQAGALVHVYTD
Intron Amino Acid Position:
1035

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
69
43.5
Major BPS
55.8
0.15
1
63
29.3
Major PPT
83.9
0.76
0.7
79.6
26
Minor 5ss
29.4
-2.4
2.7
33.5
41.7
Minor BPS
58.2
0.25
1.6
68.2
38.3

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826