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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16943860_16944434_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16943860 - 16944434
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
AGCTTCATGACT
Flanking Amino Acid:
ARKKLIEEFNKQNRWKKRGM
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
79
35.3
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
38.9
-1.2
3.7
57.4
41.7
Minor BPS
55.4
0.25
1.6
70.74
40

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826
ENSAPLT00000038749
16934732 - 16991557
56826