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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16944581_16945084_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16944581 - 16945084
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGATC
5'SS Class:
major
3'SS Sequence:
TTTCTTTGGGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ACATCCTTTATA
Flanking Amino Acid:
AQKCGLPPEEVRKLNLYNEG
Intron Amino Acid Position:
959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
70.4
40
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
66
0.36
1.2
71.2
38.7
Minor 5ss
35.1
-1.7
3.5
51.2
45.6
Minor BPS
61.9
0.37
1.6
66.29
40.6

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826