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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16945277_16946693_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16945277 - 16946693
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCTCTTCACCA
Flanking Amino Acid:
GGNSADLSYGVMDRALFHLD
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
70.9
40.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79.8
0.67
0.8
74.2
35.2
Minor 5ss
37.1
-1.5
2.8
43.3
43.8
Minor BPS
57
0.22
1.8
71.01
41.7

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826
ENSAPLT00000038749
16934732 - 16991557
56826