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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16948061_16948782_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16948061 - 16948782
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTACCT
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
AGTTCCATACAT
Flanking Amino Acid:
VSTQNLMKTQEFVASALGVP
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
62.1
42.4
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
87.6
0.85
0.7
85.4
29.3
Minor 5ss
33.6
-1.9
3.3
49.7
46
Minor BPS
50.7
0.1
2
73.91
42.1

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826