About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16952615_16953152_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16952615 - 16953152
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
ATCTGGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TGGGTCTAAATC
Flanking Amino Acid:
NDETVFAEDVVTCVGHIIGA
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
73.5
0.53
1
65.7
40.4
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
49.3
-0
1.8
57.78
41.9

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826