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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16958118_16961818_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16958118 - 16961818
Intron Length:
3701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
GAGTAAAGAAAT
Flanking Amino Acid:
LSVEIPYSREGEYFSAFKQA
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
38.1
-0.8
1.9
52.38
40.7

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826