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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16966525_16966932_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16966525 - 16966932
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTCTCTTTTATA
Flanking Amino Acid:
CCMNEKEDNMTMMSSSLFNA
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.2
39.9
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
87.4
0.84
0.6
83.7
24.7
Minor 5ss
38.6
-1.3
3.4
52.7
46.4
Minor BPS
65.9
0.5
1.6
74.52
37.4

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826