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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16967002_16967770_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16967002 - 16967770
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAGAA
U12 Branch Point Sequence:
GTGAGCAGAATA
Flanking Amino Acid:
CCRSKRENSMNGSCCGGKAN
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
46.4
-0.2
1
38.4
32.3
Major PPT
87.3
0.84
0.7
85.2
29.6
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
41.5
-0.6
2
50.87
40.4

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826