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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16967840_16969659_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16967840 - 16969659
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGAAT
U12 Branch Point Sequence:
TTTCTCAGAACT
Flanking Amino Acid:
ILEGYRTFAKNSSCCGRATH
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
62.9
0.32
1.5
72.3
40.4
Major PPT
79.4
0.66
0.8
73.3
31.8
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
60.1
0.39
1.7
83.51
36.6

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826