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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16970808_16971780_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16970808 - 16971780
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTGATATTACAT
Flanking Amino Acid:
NTKSRLHPVQERIAKSHGSQ
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83.3
0.75
0.8
76.6
37.2
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
46.4
-0.1
2
66.72
43.6

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011511
16934732 - 16991557
56826
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228