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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16971890_16973110_R

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
16971890 - 16973110
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTTATCATTTTAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATGACCTTAATT
Flanking Amino Acid:
SKYDPFQKKIIHHTANACLF
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
64.4
42.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.9
0.69
0.8
78.9
34.1
Minor 5ss
98.3
1.62
0.6
94.6
16.9
Minor BPS
75.9
0.89
1.2
83.26
37.9

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826