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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16973208_16975044_R

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
16973208 - 16975044
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATCCAAT
5'SS Class:
weak_minor
3'SS Sequence:
CCTGTATTCTCAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TTTTCCTTGATT
Flanking Amino Acid:
TTLLTYLRRKLGLCGTKLGC
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.5
-0
1.3
54.4
44.2
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
75.8
0.58
0.9
72.7
36.5
Minor 5ss
66.4
0.55
2.1
75
41.2
Minor BPS
89.6
1.33
0.7
99.24
21.9

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000027351
16936563 - 16980790
44228
ENSAPLT00000011511
16934732 - 16991557
56826