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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16975103_16980736_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16975103 - 16980736
Intron Length:
5634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAA
U12 Branch Point Sequence:
CCCTGTGTAAAA
Flanking Amino Acid:
ELVFFVNGKKVVEKDVNPET
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
84.9
0.78
0.7
79.8
25.6
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
40.5
-0.7
2.3
46.99
43.7

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027351
16936563 - 16980790
44228