About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16975103_16981597_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16975103 - 16981597
Intron Length:
6495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAA
U12 Branch Point Sequence:
CCCTGTGTAAAA
Flanking Amino Acid:
MIKPQKVVEKDVNPET
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
84.9
0.78
0.7
79.8
25.6
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
40.5
-0.7
2.3
46.99
43.7

Associated Gene:

Gene:
XDH
Ensembl Gene ID:
ENSAPLG00000010946
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038749
16934732 - 16991557
56826
ENSAPLT00000011511
16934732 - 16991557
56826