Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16981806_16991277_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

16981806 - 16991277

Intron Length:

9472

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGATAT

5'SS Class:

strong_major

3'SS Sequence:

ATGTCCTGTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TATTCATGAAAA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

86.8

22.9

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

66.9

0.38

42.4

Minor 5ss

39.6

-1.2

3.1

55.7

48.5

Minor BPS

57.8

0.24

1.8

72.87

37.8

Associated Gene:

Gene:

XDH

Ensembl Gene ID:

ENSAPLG00000010946

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011511

16934732 - 16991557

56826