Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17083657_17089226_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17083657 - 17089226

Intron Length:

5570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TTTTCCTTAACA

Flanking Amino Acid:

EIEKLKKQVTDSDQLEQQLE

Intron Amino Acid Position:

436

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

0.52

1.1

77.7

35.3

Major PPT

83.4

0.75

0.8

77.1

37.1

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

97.3

1.48

0.5

99.7

14.8

Associated Gene:

Gene:

CDC42BPA

Ensembl Gene ID:

ENSAPLG00000012422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029538

17044163 - 17147444

103282

ENSAPLT00000013024

17044224 - 17148188

103965

ENSAPLT00000027444

17044163 - 17146851

102689

ENSAPLT00000025774

17044163 - 17147444

103282

ENSAPLT00000044732

17075793 - 17147444

71652

ENSAPLT00000040126

17044163 - 17147444

103282

ENSAPLT00000024735

17044163 - 17147444

103282