About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17094902_17099850_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17094902 - 17099850
Intron Length:
4949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTGTTTTACTT
Flanking Amino Acid:
KDKLEKTRRESQSEREEFET
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
82.4
0.73
0.7
81.5
30
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
59.5
0.38
1.7
78.3
39.3

Associated Gene:

Gene:
CDC42BPA
Ensembl Gene ID:
ENSAPLG00000012422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027444
17044163 - 17146851
102689
ENSAPLT00000025774
17044163 - 17147444
103282
ENSAPLT00000044732
17075793 - 17147444
71652
ENSAPLT00000024735
17044163 - 17147444
103282
ENSAPLT00000040126
17044163 - 17147444
103282
ENSAPLT00000013024
17044224 - 17148188
103965
ENSAPLT00000029538
17044163 - 17147444
103282