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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17099957_17101742_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17099957 - 17101742
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AGTTCCTAAATT
Flanking Amino Acid:
NKKLSNELDKLTTMFERLSM
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
72.5
37.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.9
0.69
0.9
78.7
34.2
Minor 5ss
34.7
-1.7
3.2
42
38.7
Minor BPS
70.3
0.71
1.6
83.15
38.1

Associated Gene:

Gene:
CDC42BPA
Ensembl Gene ID:
ENSAPLG00000012422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013024
17044224 - 17148188
103965
ENSAPLT00000029538
17044163 - 17147444
103282
ENSAPLT00000027444
17044163 - 17146851
102689
ENSAPLT00000025774
17044163 - 17147444
103282
ENSAPLT00000044732
17075793 - 17147444
71652
ENSAPLT00000024735
17044163 - 17147444
103282
ENSAPLT00000040126
17044163 - 17147444
103282