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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17122349_17123434_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17122349 - 17123434
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCAAT
5'SS Class:
major
3'SS Sequence:
GCTTGTTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GCTTGTTTCACA
Flanking Amino Acid:
YIGSGLPALKPKAHQFVVKS
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
72.5
38.4
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.8
0.62
0.9
71.5
38.4
Minor 5ss
47.2
-0.3
2.6
66.1
45.1
Minor BPS
48.9
-0
2.2
63.17
43.7

Associated Gene:

Gene:
CDC42BPA
Ensembl Gene ID:
ENSAPLG00000012422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013024
17044224 - 17148188
103965
ENSAPLT00000029538
17044163 - 17147444
103282
ENSAPLT00000027444
17044163 - 17146851
102689
ENSAPLT00000025774
17044163 - 17147444
103282
ENSAPLT00000044732
17075793 - 17147444
71652
ENSAPLT00000024735
17044163 - 17147444
103282
ENSAPLT00000040126
17044163 - 17147444
103282