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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_171223_174820_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
171223 - 174820
Intron Length:
3598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGACACATAATA
Flanking Amino Acid:
NRQIDRIMEKADSNKTRIDE
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
80
0.75
1
78.6
31
Major PPT
76.4
0.59
0.8
69.7
36.7
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
48.9
-0
1.8
61.21
37.9

Associated Gene:

Gene:
SNAP25
Ensembl Gene ID:
ENSAPLG00000008826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009204
148081 - 174889
26809