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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17125939_17127088_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17125939 - 17127088
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
AAATATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATGTATTTAAAT
Flanking Amino Acid:
NRKDIPCIFRVTASQLSASS
Intron Amino Acid Position:
1138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.8
0.51
1
62.7
47.1
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
62.2
0.46
1.6
76.68
39.6

Associated Gene:

Gene:
CDC42BPA
Ensembl Gene ID:
ENSAPLG00000012422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024735
17044163 - 17147444
103282
ENSAPLT00000040126
17044163 - 17147444
103282
ENSAPLT00000013024
17044224 - 17148188
103965
ENSAPLT00000029538
17044163 - 17147444
103282
ENSAPLT00000027444
17044163 - 17146851
102689
ENSAPLT00000025774
17044163 - 17147444
103282
ENSAPLT00000044732
17075793 - 17147444
71652