Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17127306_17128110_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17127306 - 17128110

Intron Length:

805

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACGAAAT

5'SS Class:

strong_major

3'SS Sequence:

GTTAACATCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

CCTTTGTTAACA

Flanking Amino Acid:

IKTTQSAAIIDHERIALGNE

Intron Amino Acid Position:

1210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

80.9

33.2

Major BPS

0.52

1.1

77.7

35.3

Major PPT

62.7

0.29

39.8

Minor 5ss

34.1

-1.8

3.2

48.6

47.1

Minor BPS

59.2

0.28

2.1

70.02

42.9

Associated Gene:

Gene:

CDC42BPA

Ensembl Gene ID:

ENSAPLG00000012422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024735

17044163 - 17147444

103282

ENSAPLT00000040126

17044163 - 17147444

103282

ENSAPLT00000013024

17044224 - 17148188

103965

ENSAPLT00000029538

17044163 - 17147444

103282

ENSAPLT00000027444

17044163 - 17146851

102689

ENSAPLT00000025774

17044163 - 17147444

103282

ENSAPLT00000044732

17075793 - 17147444

71652