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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17128174_17129077_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17128174 - 17129077
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCACTGTTATCA
Flanking Amino Acid:
GLFVVHVTKDEIIRVGDNKK
Intron Amino Acid Position:
1231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.5
34.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
32.6
-2
3.5
48.1
47.5
Minor BPS
45.2
-0.3
2.2
56.85
42.6

Associated Gene:

Gene:
CDC42BPA
Ensembl Gene ID:
ENSAPLG00000012422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027444
17044163 - 17146851
102689
ENSAPLT00000025774
17044163 - 17147444
103282
ENSAPLT00000044732
17075793 - 17147444
71652
ENSAPLT00000024735
17044163 - 17147444
103282
ENSAPLT00000040126
17044163 - 17147444
103282
ENSAPLT00000013024
17044224 - 17148188
103965
ENSAPLT00000029538
17044163 - 17147444
103282