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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17133090_17133832_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17133090 - 17133832
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTATTGATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTCGTATTGATT
Flanking Amino Acid:
RLIYFKNKMAEGDELVVPET
Intron Amino Acid Position:
1490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
72.8
0.51
1
62.9
47
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
51.3
0.12
1.7
71.01
40.7

Associated Gene:

Gene:
CDC42BPA
Ensembl Gene ID:
ENSAPLG00000012422
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025774
17044163 - 17147444
103282
ENSAPLT00000044732
17075793 - 17147444
71652
ENSAPLT00000024735
17044163 - 17147444
103282
ENSAPLT00000040126
17044163 - 17147444
103282
ENSAPLT00000013024
17044224 - 17148188
103965
ENSAPLT00000029538
17044163 - 17147444
103282
ENSAPLT00000027444
17044163 - 17146851
102689