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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17155981_17156744_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17155981 - 17156744
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTGTGTTCATTT
Flanking Amino Acid:
NFFYDPQLHKVALLDFGATR
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
82.8
0.74
0.9
73.9
40.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
43.5
-0.4
2.1
60.24
44.1

Associated Gene:

Gene:
COQ8A
Ensembl Gene ID:
ENSAPLG00000014501
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015182
17153703 - 17179530
25828