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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17161259_17162295_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17161259 - 17162295
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
CTTTCATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATT
Flanking Amino Acid:
ADFMPIKQMTKTLNNDLGPN
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
69.5
36.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.3
0.73
0.7
77.6
29.8
Minor 5ss
27.6
-2.6
3
34.7
41.5
Minor BPS
66.2
0.59
1.7
84.98
35.9

Associated Gene:

Gene:
COQ8A
Ensembl Gene ID:
ENSAPLG00000014501
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015182
17153703 - 17179530
25828