About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17169726_17173973_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17169726 - 17173973
Intron Length:
4248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
TRIGRLANFGGLAVGLGIGA
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.3
0.62
1
78.1
33.8
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
COQ8A
Ensembl Gene ID:
ENSAPLG00000014501
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015182
17153703 - 17179530
25828