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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17175701_17179335_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17175701 - 17179335
Intron Length:
3635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTCTTAAAGT
Flanking Amino Acid:
QFSSAWGKVQELGKQQENLS
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
86.7
0.83
0.8
84.8
35.6
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
66.1
0.58
1.9
87.23
39

Associated Gene:

Gene:
COQ8A
Ensembl Gene ID:
ENSAPLG00000014501
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015182
17153703 - 17179530
25828