About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17204917_17205469_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17204917 - 17205469
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
CTACTTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTCTTCTACT
Flanking Amino Acid:
TSLEEPEEEERGVKLGLGDF
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33
Major BPS
100
1.24
0.5
100
0
Major PPT
77.6
0.62
0.8
71.9
32.4
Minor 5ss
30.2
-2.3
3.5
37.5
41.7
Minor BPS
59.3
0.37
1.9
80.15
41.9

Associated Gene:

Gene:
PSEN2
Ensembl Gene ID:
ENSAPLG00000014082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042818
17202898 - 17219662
16765
ENSAPLT00000041399
17201332 - 17214610
13279
ENSAPLT00000014712
17193960 - 17214610
20651