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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17209155_17209737_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17209155 - 17209737
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAA
U12 Branch Point Sequence:
TTTAAGGTAAGA
Flanking Amino Acid:
WVILGAISIYDLMAVLCPKG
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
63.3
0.33
1.1
55.4
41.7
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
39.4
-0.8
2.7
60.69
45.1

Associated Gene:

Gene:
PSEN2
Ensembl Gene ID:
ENSAPLG00000014082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042818
17202898 - 17219662
16765
ENSAPLT00000041399
17201332 - 17214610
13279
ENSAPLT00000014712
17193960 - 17214610
20651