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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17213187_17214409_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17213187 - 17214409
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TATGTGATAACT
Flanking Amino Acid:
SEAGEAQIHRKRHAGSSRSP
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
47.7
-0
2.3
73.45
43.3

Associated Gene:

Gene:
PSEN2
Ensembl Gene ID:
ENSAPLG00000014082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042818
17202898 - 17219662
16765
ENSAPLT00000041399
17201332 - 17214610
13279
ENSAPLT00000014712
17193960 - 17214610
20651