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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17214611_17218870_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17214611 - 17218870
Intron Length:
4260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCATC
5'SS Class:
major
3'SS Sequence:
CTTGTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTTTCTTTGGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.2
39.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
85.2
0.79
0.8
83.9
31.1
Minor 5ss
37.1
-1.5
3.3
50.7
46.2
Minor BPS
53.3
0.19
3.5
90.81
33.2

Associated Gene:

Gene:
PSEN2
Ensembl Gene ID:
ENSAPLG00000014082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042818
17202898 - 17219662
16765