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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17277510_17280082_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17277510 - 17280082
Intron Length:
2573

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCA|GCACGGGCC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTGCATTCAACT
Flanking Amino Acid:
CTWPQSQGGASKSWRKIKNM
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.4
63.6
36.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
21.3
-3.3
4.3
37.9
41.2
Minor BPS
55
0.24
1.7
74.86
41.7

Associated Gene:

Gene:
ITPKB
Ensembl Gene ID:
ENSAPLG00000014056
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014644
17277411 - 17289265
11855