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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17286101_17287002_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17286101 - 17287002
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTGTGGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
ACGGTCAGCACT
Flanking Amino Acid:
EFTRGNRNVLNSYLIRLKGI
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
80.2
0.68
1
76.9
42.1
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
38.6
-0.8
2
51.13
43.3

Associated Gene:

Gene:
ITPKB
Ensembl Gene ID:
ENSAPLG00000014056
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014640
17240441 - 17289265
48825