Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17287075_17289049_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17287075 - 17289049

Intron Length:

1975

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACGCTC

5'SS Class:

major

3'SS Sequence:

CCTGTCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

ACTAACTGACCC

Flanking Amino Acid:

ETSPFFKCHEVIGSSLLFIH

Intron Amino Acid Position:

539

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.2

67.8

43.5

Major BPS

0.45

0.9

67.6

25.3

Major PPT

74.7

0.56

0.8

68.8

31.7

Minor 5ss

40.9

-1

3.4

59.1

45.6

Minor BPS

45.4

-0.3

1.9

55.6

42.1

Associated Gene:

Gene:

ITPKB

Ensembl Gene ID:

ENSAPLG00000014056

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014640

17240441 - 17289265

48825