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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17299217_17305250_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17299217 - 17305250
Intron Length:
6034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAC
U12 Branch Point Sequence:
TCCTCCTCACAG
Flanking Amino Acid:
FWGMDMVILASYKEQGIPQQ
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
59.1
0.23
1.2
61.6
34.1
Major PPT
77.6
0.62
0.7
71.6
26.6
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
46.8
-0.3
2
52.48
47.8

Associated Gene:

Gene:
STUM
Ensembl Gene ID:
ENSAPLG00000017920
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035862
17298257 - 17331984
33728