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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17344738_17362607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17344738 - 17362607
Intron Length:
17870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCACTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAT
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
SLFIAVTEQMSPMFDGKVPH
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.2
34.6
Major BPS
64.2
0.35
1.3
65.8
39.5
Major PPT
82.9
0.74
0.8
79
34.3
Minor 5ss
38.8
-1.3
3
46.6
43.5
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736