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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17362771_17363646_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17362771 - 17363646
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ACATTTGAAGCT
Flanking Amino Acid:
KAIETGGPGGGKGGDQEGGG
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
70.6
41.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
85.1
0.79
0.8
77
37.3
Minor 5ss
44.8
-0.6
2.6
57.7
46.6
Minor BPS
38.9
-0.7
2.2
53.74
42.4

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736