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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17363766_17364809_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17363766 - 17364809
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TAACCTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GTCTCTTTAACC
Flanking Amino Acid:
CKGCEQKIEKGQIRISKKMV
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
64.2
0.32
0.9
55.1
40.8
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
78.8
0.88
1.1
78.83
36.8

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736