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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17370377_17370704_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17370377 - 17370704
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAC
U12 Branch Point Sequence:
CTTTTGTTAACA
Flanking Amino Acid:
KESKQEKQLKEQTELIWGIK
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
60.9
0.27
1.2
55.1
42.1
Major PPT
80.7
0.69
0.9
76.7
36.2
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
65.4
0.48
2.1
78.35
38.8

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736