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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17371915_17372342_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17371915 - 17372342
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAAGT
Flanking Amino Acid:
PNRKDWVIPKEFREIPYLKK
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.3
0.55
0.8
65.7
35.7
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
57.9
0.33
1.7
76.88
39.8

Associated Gene:

Gene:
PARP1
Ensembl Gene ID:
ENSAPLG00000014039
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014776
17344636 - 17388371
43736